SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets.

Running SOAPdenovo-Trans on Breezy

The software was distributed as pre-compiled executables, installed into the directory:

/global/software/soapdenovo/SOAPdenovo-Trans1.02

An example is provided in

/global/software/soapdenovo/SOAPdenovo-Trans1.02/example.