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SNPTEST

Table of Contents

Introduction

SNPTEST is a program used for the statisitical analysis of genome-wide associations of single nucleotide polymorphisms (SNPs) to disease occurrence. See also PLINK.

Running SNPTEST on Breezy

To run SNPTEST on Breezy use the absolute path to the binary executable file. For example, use the -help argument to list program options:

/global/software/snptest/snptest252/snptest_v2.5.2 -help

Running SNPTEST on Hermes/Nestor

To run SNPTEST on Hermes/Nestor, initialize your environment with

module load snptest

before running the snptest executable.  As on other systems, use the -help argument to list program options:

snptest -help

Running SNPTEST on Jasper

To run SNPTEST on Jasper, initialize your environment with

module load application/snptest/2.5.2

before running the snptest executable.  As on other systems, use the -help argument to list program options:

snptest -help

 

For More Information

2015-03-19 - Page created for Nestor/Hermes installation.
2016-09-23 - Updated for Breezy and Jasper.