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SHRiMP is a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem's colourspace genomic representation.
Redistribution and use in source and binary forms, with or without modification, are permitted provided that neither the names of the authors nor the names of any contributors are used to endorse or promote products derived from this software without specific prior written permission.
See the README file.
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Updated 2014-07-16 - initial installation