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IQ-TREE (phylogenetics)

Table of Contents

Introduction

IQ-TREE is a phylogenetics package for inferring maximum likelihood trees.  See the Software Versions tab for the systems on which IQ-TREE has been installed.

Running IQ-TREE on Breezy

The most recent installed version on Breezy is 1.3.3. Both serial and multi-threaded (OpenMP-based) versions of the software are available, with the executable binaries being named iqtree and iqtree-omp, respectively.  These files are in the directory /global/software/iqtree/iqtree133/bin.  See the WestGrid Running Jobs page for example job scripts for serial and OpenMP-based programs.

2015-06-20 - Page created.

System Hungabee Breezy
Version 1.3.2 1.3.3