freebayes is a haplotype-based variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing

Running Instroctions:

• bugaboo:  The name of executable files are bamleftalign and freebayes