Table of Contents

• Introduction
• Running fastStructure on Breezy

Introduction

The fastStructure software uses a variational Bayesian framework to infer population structure from large SNP genotype data.

Running fastStructure on Breezy

Initialize your environment (bash shell assumed) with:

module load python
export LD_LIBRARY_PATH=/global/software/gsl/gsl115/lib:$LD_LIBRARY_PATH

before running the software with

python /global/software/faststructure/faststructure_20150319/structure.py command_line_arguments