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Bridger

Table of Contents

Introduction

According to the program's README file, "Bridger is an efficient de novo trascriptome assembler for RNA-Seq data. It can assemble all transcripts from short reads (single or paired) without using a reference. The software expects as input RNA-Seq reads in fasta or fastq format, and ouput all assembled candidate transcripts in fasta format." The code is maintained on sourceforge.

Restrictions / License Information

Free to use under the Boost Software License V 1.0

Running Instructions

See the Software Versions tab for details on how to run Bridger on different WestGrid systems.

System Grex
Version 2014-12-01